Underdevelopment – Beta Version
Displaying 251 - 260 of 311
Type Year Title Authors Published In/At DOI or Online Location NGI Project Title NGI File # In NOAA Institutional Repository
Journal Article 2022 Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity Shaffer, J., L.F. Nothias, L.R. Thompson, J.G. Sanders, R. Salido, S. Couvillion, A. Brejnrod, S. Huang, F. Lejzerowicz, N. Haiminen, S. Huang, H. Lutz, Q. Zhu, C. Martino, J. Morton, S. Karthikeyan, M. Nothias-Esposito, K. Duhrkop, S. Bocker, H. Kim, A. Aksenov, W. Bittremieux, J. Minich, C. Marotz, M. Bryant, K. Sanders, T. Schwartz, G. Humphrey, Y. Vazquez-Baeza, A. Tripathi, L. Parida, A.P. Carrieri, K. Beck, P. Das, A. Gonzalez, D. McDonald, S. Karst, M. Albertsen, G. Ackermann, J. DeReus, Nature Microbiology https://doi.org/10.1038/s41564-022-01266-x Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases 20-NGI3-112
Journal Article 2022 Lake Erie field trials to advance autonomous monitoring of cyanobacterial harmful algal blooms Den Uyl, P.A., L.R. Thompson, R.M. Errera, J.M. Birch, C.M. Preston, W. Ussler, C.E. Yancey, S.R. Chaganti, S.A. Ruberg, G.J. Doucette, G.J. Dick, C.A. Scholin & K.D. Goodwin Frontiers of Marine Science https://doi.org/10.3389/fmars.2022.1021952 Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases 20-NGI3-112
Journal Article 2022 Dominance of Sulfurospirillum in metagenomes associated with the methane ice worm (Sirsoe methanicola) Lim, S.J., L.R. Thompson, C.M. Young, T. Gaasterland, K.D. Goodwin Applied and Environmental Microbiology https://doi.org/10.1128/aem.00290-22 Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases 20-NGI3-112
Conference Presentation 2022 Machine learning-based taxonomic classification of DNA sequences in marine metagenomes Thompson, L.R., S.J. Lim, H. Park, J. Cosme, K. O’Connell, H. Moustahfid, F. Gayanilo, J. Sandeep, C. Nitikitpaiboon, G.R. Cutter, E. Montes, G. Johnson, S. Fisher ICES Annual Science Conference https://doi.org/10.17895/ices.pub.21558069.v1 Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases 20-NGI3-112
Workshop/Meeting Presentation 2023 Behind the Paper from the Knight Lab and EMP Group at UC San Diego Thompson, L. R, J. Shaffer Metabolomics Association of North America Microbiome Interest Group https://www.metabolomicsna.org/interest-groups-mana/#microbiome Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases 20-NGI3-112
Workshop/Meeting Presentation 2022 Environmental DNA for the study of ocean biodiversity from microbes to vertebrates Thompson, L. R. World Aquatic Veterinary Medical Association Applying Omics Technologies to Support Cetacean Conservation in the Gulf of Mexico 21-NGI3-131
Journal Article 2023 Decoding dissolved information: environmental DNA sequencing at global scale to monitor a changing ocean Thompson, L.R., P. Thielen Current Opinion in Biotechnology https://doi.org/10.1016/j.copbio.2023.102936 Characterizing the biodiversity and variability of the biological carbon pump in the Northern Gulf of Mexico 21-NGI4-06
Workshop/Meeting Presentation 2023 Sustained observations of global ocean biology – session introduction Thompson, L. R. OCB2023 Summer Workshop https://web.whoi.edu/ocb-workshop/ Characterizing the biodiversity and variability of the biological carbon pump in the Northern Gulf of Mexico 22-NGI4-35
Journal Article 2023 Message in a bottle: archived DNA reveals marine heatwave-associated shifts in fish assemblages Gold, Z., R.P. Kelly, A.O. Shelton, A. Thompson, K.D. Goodwin, R. Gallego, K. Parsons, L.R. Thompson, D. Kacev & P.H. Barber Environmental DNA https://doi.org/10.1002/edn3.400 HPC-powered Bioinformatics to Unlock the Potential of NOAA 'Omics Data 22-NGI4-33
Workshop/Meeting Presentation 2022 Global marine biodiversity monitoring through partnership and innovation Thompson, L. R. NOAA ’Omics Seminar Series https://www.youtube.com/watch?v=gXuN_Q15NUY Assessing Ecosystem Responses of Gulf of Mexico Communities to OA using Environmental DNA (eDNA-GOMECC-4) 21-NGI3-132